- The Anchor, illustrated by Paco Diaz, which continues the story of Alex Mercer, the protagonist from the first game.
- The Survivors, illustrated by Chris Staggs, which follows a small group of residents of New York trying to escape the city after it has been transformed into NYZ with the outbreak of the Blacklight virus.
- The Labyrinth, illustrated by Victor Drujiniu, which gives fans a deeper look into the backstory of Prototype 2's new protagonist, Sergeant James Heller.
To celebrate their release, Digital Spy has ten free download codes to give away, redeemable here.
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Read Digital Spy's interview with Prototype 2's Dave Marshall here.