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The Marin County Superior Court commissioner dismissed their divorce petition during a Tuesday hearing, reports Extra.
They were seen at an Eddie Vedder concert at the University of California the previous night, where Penn reportedly took to the stage to dedicate a song to his wife.
They split in December amid rumours that the actor had been caught partying with two Russian girls at a hotel during a romantic break.
It was reported last month that he had been calling Wright Penn in a bid to persuade her to give him another chance.
The couple have been married for 11 years and have children Hopper Jack, 14, and 16-year-old Dylan Frances.
