The BBC One drama - which starred Douglas Booth as Pip and Gillian Anderson as Miss Havisham - receives nods in seven categories. It is followed by Sir David Attenborough's wildlife series Frozen Planet and drama Birdsong, both of which receive five nominations.
> 'Birdsong' - Eddie Redmayne Q&A: 'Reading the novel blew my mind'
ITV1's Appropriate Adult, starring Dominic West as serial killer Fred West, is up for four awards.
Downton Abbey and BBC One's Sherlock both receive nods in three categories, in addition to Channel 4's contemporary drama Top Boy and BBC Two's The Crimson Petal and the White, starring Chris O'Dowd and Romola Garai.
The BAFTA TV Craft Award nominations precede the nominations for this year's YouTube Audience Award, which will be revealed on Thursday, April 19.
> 'Great Expectations' - Douglas Booth Q&A: 'The show is epic and rich'
The full BAFTA TV Awards nominations announcement will be made on Tuesday, April 24.
The BAFTA TV Craft Awards take place on Sunday, May 13 at The Brewery in London.
Watch a clip from Great Expectations below: